Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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ispZPossible intracellular septation protein (ispZ family); Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family. (205 aa)    
Predicted Functional Partners:
ftsY
Putative cell division protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.
  
    0.865
RPA0210
Pseudouridine synthase:Pseudouridine synthase, Rlu.
       0.711
RPA0627
Putative haloacid dehalogenase superfamily hydrolase.
 
     0.561
RPA0200
Conserved hypothetical protein.
 
     0.542
RPA1263
Putative II.1 protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.509
thrB
Homoserine kinase; Belongs to the pseudomonas-type ThrB family.
  
   
 0.425
RPA3937
Putative methionine sulfoxide reductase, SelR.
  
    0.416
msrB
DUF25; Belongs to the MsrB Met sulfoxide reductase family.
  
    0.416
RPA0078
Protein of unknown function UPF0079; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
     0.405
ubiB
Ubiquinone biosynthesis protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.400
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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