Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA0213Possible OmpA family member; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (689 aa)    
Predicted Functional Partners:
RPA4223
Response regulator receiver (CheY-like protein) with unknown domain; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
 
 0.642
flgC
Flagellar basal-body rod protein flgC; Belongs to the flagella basal body rod proteins family.
   
 
 0.630
RPA3393
Conserved hypothetical protein.
  
  
 0.580
RPA2432
Putative signal transduction histidine kinase with response regulator receiver domain; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
   
 0.560
RPA1322
Putative signal transduction histidine kinase.
  
     0.524
TolB
Tol-Pal system protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.515
RPA0992
Probable transcriptional regulator, Crp/Fnr family; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
   
 0.512
cpoB
Conserved hypothetical protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
  
  
 0.475
RPA0136
Methyl-accepting chemotaxis receptor/sensory transducer; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
   
 0.451
fliF
Putative flagellar M-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
   
 
 0.445
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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