Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
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RPA0259HTransmembrane sensor and HAMP domains; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (260 aa)    
Predicted Functional Partners:
RPA4417
Sensor histidine kinase with PAS/PAC and response regulator receiver domains.
   
 
 0.692
RPA3832
Putative diguanylate cyclase (GGDEF) with PAS/PAC domain.
   
 
 0.658
cckA
Sensor histidine kinase with multiple PAS and a response regulator receiver domain; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
 
 0.590
RPA1557
Response regulator receiver with duplicated domains.
   
 
 0.570
RPA1818
Putative diguanylate cyclase (GGDEF).
   
 
 0.570
RPA3132
Putative diguanylate cyclase (GGDEF) with response regulator receiver domain.
   
 
 0.570
RPA0853
Sensor histidine kinase, possible proline sensor PrlS; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
 
 0.554
RPA1681
Sensor histidine kinase with a response regulator receiver domain.
   
 
 0.524
RPA0494
Sensor histidine kinase with PAS/PAC and Response regulator receiver domains.
   
 
 0.521
RPA0583
Sensor histidine kinase with PAS/PAC and Response regulator receiver domains; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
   
 
 0.521
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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