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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA0259HTransmembrane sensor and HAMP domains; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (260 aa)    
Predicted Functional Partners:
RPA3832
Putative diguanylate cyclase (GGDEF) with PAS/PAC domain.
  
 
 0.611
RPA4417
Sensor histidine kinase with PAS/PAC and response regulator receiver domains.
  
 
 0.582
RPA2135
Sensor histidine kinase with a response regulator receiver domain.
  
 
 0.565
cckA
Sensor histidine kinase with multiple PAS and a response regulator receiver domain; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
 0.565
RPA0853
Sensor histidine kinase, possible proline sensor PrlS; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
 0.532
RPA1557
Response regulator receiver with duplicated domains.
  
 
 0.529
RPA2107
Sensor histidine kinase with a GAF, a Ser/Thr protein kinase, and an unknown domain.
  
  
 0.528
RPA1818
Putative diguanylate cyclase (GGDEF).
   
 
 0.526
RPA3132
Putative diguanylate cyclase (GGDEF) with response regulator receiver domain.
   
 
 0.526
RPA0638
Conserved hypothetical protein; InterPro IPR001951 COGs COG1011.
  
    0.505
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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