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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA0286Putative diguanylate cyclase (GGDEF) with HAMP domain. (557 aa)    
Predicted Functional Partners:
RPA4417
Sensor histidine kinase with PAS/PAC and response regulator receiver domains.
 
 0.888
RPA0145
Metal dependent phosphohydrolase with a response regulator receiver domain; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
 0.884
RPA1680
Putative response regulator and cylclic diguanylate phosphodiesterase (EAL).
  
 0.869
RPA3184
Putative cylclic diguanylate phosphodiesterase (EAL).
  
 0.840
vieA
Putative cylclic diguanylate phosphodiesterase (EAL).
 
  
 0.838
RPA0521
Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL).
 
 0.824
fliF
Putative flagellar M-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
  
  
 0.810
RPA1248
Two-component transcriptional regulator, LuxR family.
 
 
 0.802
RPA2107
Sensor histidine kinase with a GAF, a Ser/Thr protein kinase, and an unknown domain.
 
 
 0.785
RPA4830
Metal dependent phosphohydrolase with a response regulator receiver domain.
 
 
 0.769
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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