Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RPA0303Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (289 aa)    
Predicted Functional Partners:
RPA0305
Possible DNA mismatch repair protein (MutS).
 
    0.876
RPA0304
Possible outer membrane lipoprotein GNA33, membrane-bound lytic murein transglycosylase.
  
    0.857
RPA4272
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.762
secB
Putative protein-export protein SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
 
     0.733
RPA0075
Conserved hypothetical protein.
  
    0.671
RPA0541
Conserved hypothetical protein.
  
     0.670
RPA0423
Conserved hypothetical protein; COGs COG1154.
  
     0.659
RPA2421
NADH:ubiquinone oxidoreductase 17.2 k.
  
    0.652
RPA0289
Conserved hypothetical protein; InterPro IPR000209 COGs COG1466.
 
     0.649
RPA0198
Possible acetate transporter, stationary-phase anti-death (SAD) family; Belongs to the BI1 family.
  
  
 0.648
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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