STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA0348Possible hydrolase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (307 aa)    
Predicted Functional Partners:
RPA2346
Hypothetical protein; InterPro IPR006311.
  
     0.642
RPA1277
Possible beta-ketoadipate enol-lactone hydrolase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
  
 0.554
dcm
Possible site-specific DNA-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
     
 0.524
vsr
Putative patch repair protein; May nick specific sequences that contain T:G mispairs resulting from m5C-deamination.
       0.524
RPA0351
Hypothetical protein.
       0.524
RPA2105
Non-heme chloroperoxidase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.470
RPA2614
Conserved hypothetical protein.
 
  
 0.469
RPA3731
Alpha/beta hydrolase fold:Esterase/lipase/thioesterase, active site.
  
   
 0.453
RPA0996
Alpha/beta hydrolase fold.
  
   
 0.451
RPA0746
Possible deca-heme c-type cytochrome; Shewanella putrefaciens homolog is involved in metal reduction. Homology is only in C-terminal 60% of predicted protein.
  
    0.449
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.