Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA0390Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domains. (745 aa)    
Predicted Functional Partners:
RPA1248
Two-component transcriptional regulator, LuxR family.
 
 
 0.863
RPA4417
Sensor histidine kinase with PAS/PAC and response regulator receiver domains.
  
 
 0.839
RPA4790
Response regulator receiver:histidine kinase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
 0.744
RPA1681
Sensor histidine kinase with a response regulator receiver domain.
  
 
 0.736
RPA1180
Putative cylclic diguanylate phosphodiesterase (EAL).
 
 
 0.724
RPA3316
Possible chemotaxis cheB/cheR fusion protein.
 
  
 0.721
RPA0853
Sensor histidine kinase, possible proline sensor PrlS; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
 
 0.694
RPA0529
Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
0.691
RPA2107
Sensor histidine kinase with a GAF, a Ser/Thr protein kinase, and an unknown domain.
 
 
 0.669
RPA0494
Sensor histidine kinase with PAS/PAC and Response regulator receiver domains.
  
 
 0.665
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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