Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA0406Conserved unknown protein. (481 aa)    
Predicted Functional Partners:
RPA0407
Possible TonB-dependent receptor (outer membrane siderophore receptor).
 
  
 0.963
RPA2929
Conserved hypothetical protein.
  
    0.602
RPA2400
Conserved hypothetical protein; COGs COG0811.
 
    0.536
RPA2745
Possible ferric siderophore receptor protein.
 
  
 0.513
RPA2401
Conserved unknown protein.
 
    0.511
RPA1845
Putative tonB-dependent receptor protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.500
RPA3512
Conserved hypothetical protein.
 
     0.478
RPA2378
Putative tonB-dependent receptor protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.477
RPA2931
DUF461; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
    0.452
RPA1816
Putative outer membrane receptor for iron transport.
 
   
 0.450
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.