Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
RPA0407Possible TonB-dependent receptor (outer membrane siderophore receptor). (758 aa)    
Predicted Functional Partners:
RPA0406
Conserved unknown protein.
 
  
 0.963
RPA1340
Probable FecR, iron siderophore sensor protein.
 
 
 0.731
RPA1335
Probable FecR, iron siderophore sensor protein.
 
 
 0.723
RPA1848
Uncharacterized iron-regulated membrane protein DUF337.
 
  
 0.720
fecR3
Probable FecR, iron siderophore sensor protein.
 
 
 0.716
PA0781
Putative outer membrane hemin/siderophore receptor protein.
 
  
 0.712
RPA3338
Possible Condensation domain, peptide synthetase.
  
  
 0.683
RPA3281
Probable FecR, iron siderophore sensor protein.
 
 
 0.672
RPA1345
Conserved hypothetical protein.
 
 
 0.642
RPA1241
Possible tonB transport protein.
 
 
 0.635
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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