STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA0407Possible TonB-dependent receptor (outer membrane siderophore receptor). (758 aa)    
Predicted Functional Partners:
RPA0406
Conserved unknown protein.
 
  
 0.959
PA0781
Putative outer membrane hemin/siderophore receptor protein.
 
  
 0.723
RPA1340
Probable FecR, iron siderophore sensor protein.
 
 
 0.722
RPA1335
Probable FecR, iron siderophore sensor protein.
 
 
 0.715
RPA1848
Uncharacterized iron-regulated membrane protein DUF337.
 
  
 0.714
fecR3
Probable FecR, iron siderophore sensor protein.
 
 
 0.709
RPA3338
Possible Condensation domain, peptide synthetase.
  
  
 0.679
RPA3281
Probable FecR, iron siderophore sensor protein.
 
 
 0.662
RPA1345
Conserved hypothetical protein.
 
 
 0.628
RPA1241
Possible tonB transport protein.
 
 
 0.622
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.