STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA0420Conserved hypothetical protein; InterPro IPR001899. (206 aa)    
Predicted Functional Partners:
RPA0421
Possible cytochrome P450 hydroxylase superfamily proteins.
  
    0.645
RPA0419
Possible short chain dehydrogenase/reductase family member; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.528
RPA0492
Conserved hypothetical protein.
 
    0.468
RPA0418
Glutamine amidotransferase class-I.
 
     0.448
RPA0060
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
    0.439
RPA0487
Conserved unknown protein; InterPro IPR006025 COGs COG0501.
  
    0.439
RPA0849
Conserved hypothetical protein; InterPro IPR001687.
  
    0.438
RPA2457
Hypothetical protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.428
RPA0422
Possible dehydrogenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.424
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.