Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Experiments
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[Homology]
Score
RPA0443Possible transcriptional regulator, XRE family; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (139 aa)    
Predicted Functional Partners:
recO
Putative DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
  
 0.755
lnt
Putative apolipoprotein n-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.
 
   
 0.743
trmB
Putative methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
     
 0.730
RPA0289
Conserved hypothetical protein; InterPro IPR000209 COGs COG1466.
  
     0.711
RPA1183
Conserved unknown protein.
  
    0.689
RPA4367
Sensor histidine kinase.
  
   
 0.685
RPA1182
Conserved hypothetical protein.
  
     0.682
RPA4272
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.671
RPA4739
Conserved hypothetical protein.
  
   
 0.667
RPA2737
Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
    0.664
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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