Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA0459Possible fatty acid-CoA ligases. (163 aa)    
Predicted Functional Partners:
RPA0458
Possible fatty acid-CoA ligases.
     0.994
RPA1368
Conserved hypothetical protein; COGs COG0318.
 
     0.921
fadD2
Putative long-chain fatty acid-CoA ligase.
 
     0.896
RPA2146
Putative long-chain-fatty-acid--CoA ligase.
 
    0.887
mcyE
Possible McyE polykeitde synthase and peptide synthetase (AF183408).
  
 0.758
RPA3445
Probable acetyl-CoA synthetase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 0.693
pimA
pimeloyl-CoA ligase.
 
     0.610
RPA3465
Putative long-chain-fatty-acid CoA ligase.
 
      0.604
RPA0460
Putative esterase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
       0.513
RPA2142
Putative fatty-acid--CoA ligase.
 
     0.471
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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