STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA0465Possible transmembrane protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (477 aa)    
Predicted Functional Partners:
RPA1879
Choloylglycine hydrolase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
     0.514
RPA0466
Conserved hypothetical protein.
       0.486
RPA0467
Putative glycerate dehydrogenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.486
RPA0468
Putative ATP-binding protein of ABC transporter.
       0.486
AtsC
Putative sulfate ester transporter; ATP-binding component.
       0.486
RPA0470
Perplasmic binding protein of ABC transporter.
       0.486
RPA4341
Beta-lactamase-like.
 
     0.443
RPA1010
Beta-lactamase-like:ATP/GTP-binding site motif A (P-loop).
 
     0.438
RPA2834
Conserved hypothetical protein.
 
     0.401
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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