STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA0470Perplasmic binding protein of ABC transporter. (380 aa)    
Predicted Functional Partners:
RPA0468
Putative ATP-binding protein of ABC transporter.
 
  
 0.968
AtsC
Putative sulfate ester transporter; ATP-binding component.
 
  
 0.959
RPA0471
Putative creatine amidohydrolase.
 
    0.809
RPA0466
Conserved hypothetical protein.
       0.781
RPA0467
Putative glycerate dehydrogenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.781
RPA2042
Putative ABC transporter, permease protein.
 
  
 0.575
RPA3383
Possible taurine transport system permease protein.
 
  
 0.522
RPA2498
Possible ABC transporter, permease protein.
 
  
 0.512
RPA2623
Possible sulfonate transport system permease protein. Subunit of an ABC transporter.
 
  
 0.504
RPA0882
ABC transporter, permease.
 
  
 0.489
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.