Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA0472OmpA-like transmembrane domain. (736 aa)    
Predicted Functional Partners:
RPA0563
Conserved hypothetical protein.
  
   
 0.709
RPA1807
Possible heavy metal efflux pump, HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
 0.696
ragD
Possible cation/heavy metal efflux pump, HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
 0.645
PA0781
Putative outer membrane hemin/siderophore receptor protein.
  
   
 0.600
ragC
Putative cation efflux system protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
   
 0.522
czcA1
Putative RND divalent metal cation efflux transporter CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
   
 0.513
RPA1991
Conserved hypothetical protein.
 
     0.496
RPA2289
Hypothetical protein; InterPro IPR001440.
  
     0.484
RPA0405
Conserved hypothetical protein; COGs COG2358.
  
    0.469
RPA0183
Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.463
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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