Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA0492Conserved hypothetical protein. (345 aa)    
Predicted Functional Partners:
RPA1865
Conserved hypothetical protein.
  
    0.776
RPA1995
Conserved hypothetical protein.
  
     0.762
RPA3411
Conserved hypothetical protein; InterPro IPR000694.
  
     0.760
RPA4219
Conserved hypothetical protein; InterPro IPR001687.
  
     0.756
RPA1072
Conserved hypothetical protein.
  
     0.755
RPA0538
Putative Omp2b porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.754
RPA1634
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.753
RPA3423
Conserved unknown protein; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.751
tRNA-Ser1
tRNA-Ser; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.750
RPA3432
Conserved hypothetical protein.
  
     0.750
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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