STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA0515Possible efflux pump protein FarA. (389 aa)    
Predicted Functional Partners:
FarB
Putative efflux pump protein FarB; Belongs to the major facilitator superfamily.
 
 0.967
RPA0516
Transcriptional regulator, MarR family.
 
  
 0.868
emrB2
Putative drug efflux pump, Major Facilitator Superfamily (MFS).
 
 0.858
rmrB
Putative multidrug efflux pump, Major Facilitator Superfamily (MFS); Citation: Gonzalez-Pasayo and Martinez-Romero (2000) Mol. Plant Microbe Interact. 13:572-577; Belongs to the major facilitator superfamily.
 
 0.856
emrB1
Putative multidrug resistance protein B (drug efflux transporter); Belongs to the major facilitator superfamily.
 
 0.853
RPA2572
Possible outer membrane efflux protein.
 
 
 0.664
oprN
Putative outer membrane efflux protein OprN precursor.
 
 
 0.648
RPA0788
Possible Major Facilitator Superfamily (MFS) efflux pump.
 
 
 0.644
RPA2373
Possible outer membrane protein.
 
 
 0.641
RPA1925
Putative transmembrane protein.
 
 0.623
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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