Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
fur-3Transcriptional regulator, Fur family; probable zinc uptake regulator ZUR; Belongs to the Fur family. (165 aa)    
Predicted Functional Partners:
pchR
Putative transcriptional regulator PchR, AraC family.
   
  
 0.763
pigA
Possible iron-starvation protein.
   
  
 0.743
gcpE
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin); Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.
       0.660
RPA0859
ABC transporter, permease protein.
  
  
 0.628
RPA0858
ABC transporter, ATP-binding protein.
  
  
 0.612
RPA2443
Probable antioxidant protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
  
 0.606
RPA0515
Possible efflux pump protein FarA.
 
  
 0.600
RPA2639
Probable L-2-amino-thiazoline-4-carboxylic acid hydrolase.
  
    0.591
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.572
RPA0518
Permeases of the drug/metabolite transporter (DMT) superfamily.
       0.566
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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