Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA0527Conserved hypothetical protein. (210 aa)    
Predicted Functional Partners:
RPA0628
Conserved unknown protein.
  
     0.753
RPA0730
Conserved hypothetical protein.
  
     0.642
RPA1508
Conserved hypothetical protein.
  
     0.615
RPA0440
Conserved hypothetical protein.
  
     0.584
RPA1817
Conserved hypothetical protein.
  
     0.579
rpmF,
50S ribosomal protein L32; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
       0.568
RPA1180
Putative cylclic diguanylate phosphodiesterase (EAL).
 
     0.568
RPA2375
Conserved hypothetical protein; COGs COG1807.
 
     0.568
RPA0495
Conserved hypothetical protein; InterPro IPR000104:IPR001687:IPR006311.
  
     0.567
RPA0729
Conserved hypothetical protein.
  
     0.562
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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