Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ChrRSensor protein ChrR, cytochrome cycA regulator. (220 aa)    
Predicted Functional Partners:
RPA0550
RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.977
RPA2571
Possible NADPH-dependent oxidoreductase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.948
RPA2570
Conserved hypothetical protein; COGs COG3496.
 
  
 0.918
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.
      
 0.778
cfa1
Cyclopropane-fatty-acyl-phospholipid synthase.
 
   
 0.750
maiA
Putative maleylacetoacetate isomerase.
     
 0.747
RPA0924
Possible cyclopropane-fatty-acyl-phospholipid synthase.
 
  
 0.736
cfa2
Cyclopropane-fatty-acyl-phospholipid synthase.
     
 0.687
sigE
RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.524
RPA1635
RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.523
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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