STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA0559Putative pirin; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the pirin family. (305 aa)    
Predicted Functional Partners:
purC1
Putative phosphoribosylaminoimidazole-succinocarboxamide synthase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the SAICAR synthetase family.
       0.662
RPA4286
Catalytic LigB subunit of aromatic ring-opening dioxygenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.555
MLYCD,
malonyl-CoA decarboxylase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
    0.552
RPA1957
Alkanal monooxygenase (LuxA-like protein); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
  
 0.447
RPA2100
Possible hydrolase.
 
  
 0.442
flgL
Possible flagellin and hook associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
   
    0.414
msuD
Methanesulfonate sulfonatase MsuD (monooxygenase); Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family.
  
  
 0.414
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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