Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA0563Conserved hypothetical protein. (385 aa)    
Predicted Functional Partners:
RPA0472
OmpA-like transmembrane domain.
  
   
 0.709
RPA4814
Conserved hypothetical protein.
  
     0.674
RPA2834
Conserved hypothetical protein.
  
     0.672
RPA2289
Hypothetical protein; InterPro IPR001440.
  
     0.581
RPA1991
Conserved hypothetical protein.
  
     0.572
RPA3728
Conserved unknown protein.
  
   
 0.556
RPA0562
MmgE/PrpD family; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
    0.555
RPA1062
Conserved hypothetical protein; COGs COG0477.
  
     0.538
nifU
Putative nifU protein; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
    0.535
RPA3392
Possible nifU homolog.
   
    0.526
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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