Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RPA0567Probable transcriptional regulator, AraC family. (325 aa)    
Predicted Functional Partners:
hrpB
Putative ATP-dependent helicase.
      
 0.743
RPA0022
DSBA oxidoreductase.
      
 0.741
RPA1011
DSBA oxidoreductase.
      
 0.741
RPA2183
DSBA oxidoreductase.
      
 0.741
RPA2110
Probable transcriptional regulator, AraC family.
  
     0.722
RPA1321
Probable transcriptional regulator, AraC family.
  
     0.710
nadA
Quinolinate synthetase A; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.
      
 0.634
RPA1058
Probable transcriptional regulator, AraC family.
  
     0.516
RPA2423
Probable transcriptional regulator, AraC family.
 
 
 0.483
phnB
Conserved hypothetical protein; COGs COG2764.
 
    0.423
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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