STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA0588Transcriptional regulator, TetR family. (226 aa)    
Predicted Functional Partners:
RPA0587
Putative cationic amino acid transporter.
  
  
 0.654
RPA0586
Putative PAN2 protein; short shain alcohol dehydrogenase.
  
    0.576
RPA0589
Possible acyl-CoA dehydrogenase.
  
    0.549
RPA0585
Chromate transporter.
 
    0.521
RPA2209
ParB-like nuclease.
  
 
 0.430
RPA1341
Conserved hypothetical protein; InterPro IPR000104:IPR001687:IPR003439.
  
    0.426
RPA2207
Putative recombinase.
  
    0.401
RPA3870
Hypothetical protein.
  
    0.401
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.