Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
sigERNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (232 aa)    
Predicted Functional Partners:
phnM1
Possible phosphonate utilization (C-P lyase) component; E. coli PhnM, HisM-like integral membrane protein.
      
 0.741
RPA3282
RNA polymerase ECF-type sigma factor, possible FecI; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.690
fliC
Putative flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
   
 0.652
flgL
Possible flagellin and hook associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
   
 0.637
RPA0642
Conserved hypothetical protein.
 
    0.610
fliD
Possible flagellar hook-associated protein 2 (FliD, filament cap protein); Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
 
     0.555
ChrR
Sensor protein ChrR, cytochrome cycA regulator.
 
 
 0.524
RPA0980
Sensor histidine kinase with a PAS domain.
      
 0.510
badI
2-ketocyclohexanecarboxyl-CoA hydrolase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily.
      
 0.509
RPA4098
Putative RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.489
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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