Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
badCPutative alcohol dehydrogenase. (339 aa)    
Predicted Functional Partners:
aliB
cyclohexanecarboxyl-CoA dehydrogenase.
 
 
 0.750
badD
benzoyl-CoA reductase subunit.
  
  
 0.734
badB
Ferredoxin.
  
  
 0.711
badR
Benzoate anaerobic degradation transcriptional regulator BadR, MarR family; Transcriptional activator of genes for the anaerobic degradation of benzoate.
 
    0.684
badK
cyclohex-1-ene-1-carboxyl-CoA hydratase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.677
badI
2-ketocyclohexanecarboxyl-CoA hydrolase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily.
  
  
 0.648
mcyE
Possible McyE polykeitde synthase and peptide synthetase (AF183408).
  
 
 0.608
badA
benzoate-CoA ligase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
  
 0.583
hbaA
4-hydroxybenzoate-CoA ligase; Catalyzes the ligation of 4-hydroxybenzoate, benzoate or cyclohex-1,4-dienecarboxylate and CoA at the expense of ATP. The enzyme shows low activity towards cyclo-2,5-dienecarboxylate, 4- fluorobenzoate, 4-chlorobenzoate and 2-methoxybenzoate. Belongs to the ATP-dependent AMP-binding enzyme family. Benzoate-CoA ligase subfamily.
   
  
 0.572
badH
2-hydroxycyclohexanecarboxyl-CoA dehydrogenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
   0.564
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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