Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
badMPutative transcriptional regulator, badM. (156 aa)    
Predicted Functional Partners:
badL
Possible acetyltransferase.
 
 
 0.926
nifU
Putative nifU protein; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.915
nifS1
Putative cysteine desulfurase, nifS homolog.
  
  
 0.860
nifS2
Nitrogenase cofactor synthesis protein nifS; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
  
  
 0.860
aadR
Anaerobic aromatic degradation regulator aadR, Crp/Fnr family; Transcriptional activator of anaerobic gene expression. For aromatic acid degradation. Also required for the anaerobic degradation of benzoate.
  
  
 0.776
badB
Ferredoxin.
  
  
 0.754
badR
Benzoate anaerobic degradation transcriptional regulator BadR, MarR family; Transcriptional activator of genes for the anaerobic degradation of benzoate.
      
 0.752
RPA0676
Possible enoyl-CoA hydratase/isomerase family member.
     
 0.744
aliB
cyclohexanecarboxyl-CoA dehydrogenase.
   
  
 0.638
badK
cyclohex-1-ene-1-carboxyl-CoA hydratase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the enoyl-CoA hydratase/isomerase family.
      
 0.630
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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