STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hbaRHydroxybenzoate anaerobic degradation regulatory protein HbaR, Crp/Fnr family. (241 aa)    
Predicted Functional Partners:
aadR
Anaerobic aromatic degradation regulator aadR, Crp/Fnr family; Transcriptional activator of anaerobic gene expression. For aromatic acid degradation. Also required for the anaerobic degradation of benzoate.
  
  
 0.904
badR
Benzoate anaerobic degradation transcriptional regulator BadR, MarR family; Transcriptional activator of genes for the anaerobic degradation of benzoate.
   
  
 0.749
lexA
SOS response transcriptional repressor, lexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
   
  
 0.729
RPA0766
Transcriptional regulator, Crp/Fnr family.
  
     0.725
RPA1729
Fatty acid desaturase family.
   
  
 0.722
RPA4422
Transcriptional regulator, Crp/Fnr family.
  
   
 0.666
RPA3863
Transcriptional regulator, Crp/Fnr family.
  
  
 0.619
badM
Putative transcriptional regulator, badM.
  
  
 0.588
RPA1090
Transcriptional regulatorn, Crp/Fnr family.
  
     0.563
badL
Possible acetyltransferase.
   
  
 0.552
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.