Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA0677Hypothetical protein. (483 aa)    
Predicted Functional Partners:
RPA0676
Possible enoyl-CoA hydratase/isomerase family member.
 
 
 0.993
badF
benzoyl-CoA reductase subunit.
  
 
  0.931
badG
benzoyl-CoA reductase subunit.
  
 
  0.930
badD
benzoyl-CoA reductase subunit.
  
 
  0.925
badE
benzoyl-CoA reductase subunit.
  
 
  0.925
hbaB
4-hydroxybenzoyl-CoA reductase, first of three subunits.
   
 
  0.902
hbaC
4-hydroxybenzoyl-CoA reductase,second of three subunits.
   
 
  0.902
hbaD
4-hydroxybenzoyl-CoA reductase, third of three subunits; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
   
 
  0.902
RPA0675
Possible hydrolases (alpha/beta hydrolase superfamily).
 
    0.867
aroK-2
Possible Shikimate kinase with a Helix-turn-helix domain; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
 
   
 0.818
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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