STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA0682Possible ABC transporter ATP-binding component, membrane bound. (904 aa)    
Predicted Functional Partners:
RPA0681
Membrane permeases, predicted cation efflux pump; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.959
RPA0683
Possible ABC transporter permease component.
 
  
0.916
RPA4088
Probable membrane fusion protein (HlyD family of secretion proteins) linked to ABC efflux pumps.
  
 0.838
RPA4087
ABC-2 type transport system permease and double ATP-binding protein fusion.
  
  
 0.821
nosY
Putative NosY protein, possible ABC permease.
  
 
 0.692
RPA4086
Probable permease of ABC transporter.
 
  
0.629
RPA3026
Similar to abortive infection protein.
  
  
 0.607
nosR
Regulatory protein NosR.
  
  
 0.582
RPA3200
Putative dual serine/threonine-protein kinase/phosphatase.
  
 
 0.577
RPA0680
Possible transcriptional regulator, TetR family.
     
 0.564
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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