Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA0683Possible ABC transporter permease component. (377 aa)    
Predicted Functional Partners:
RPA0681
Membrane permeases, predicted cation efflux pump; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.961
RPA0682
Possible ABC transporter ATP-binding component, membrane bound.
 
  
0.916
RPA4088
Probable membrane fusion protein (HlyD family of secretion proteins) linked to ABC efflux pumps.
  
 0.842
RPA3789
Putative ATP-binding component of a transport system.
  
 0.734
RPA4087
ABC-2 type transport system permease and double ATP-binding protein fusion.
 
  
0.634
RPA3790
Putative efflux protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.617
RPA0573
Putative ABC transporter (ATP-binding protein); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
 0.544
RPA0680
Possible transcriptional regulator, TetR family.
       0.537
RPA3026
Similar to abortive infection protein.
  
  
 0.446
nosF
Putative NosF protein (an ABC transporter).
  
  
 0.443
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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