STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA0703Conserved hypothetical protein. (234 aa)    
Predicted Functional Partners:
phnM2
Possible phosphonate ABC transporter, permease component; E. coli PhnM, HisM-like integral membrane protein.
 
     0.956
RPA0701
Putative acetyltransferase (virginiamycin, streptogramin A, chloramphenicol).
 
     0.929
phnM1
Possible phosphonate utilization (C-P lyase) component; E. coli PhnM, HisM-like integral membrane protein.
 
     0.858
phnN
ATP-binding component, PhnN protein, possible kinase; Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP).
     0.850
phnL
Phosphonate ABC transporter, ATP-binding component, PhnL protein.
 
     0.847
phnJ
PhnJ protein, phosphonate metabolism, function unknown; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.
 
    0.830
phnH
Putative PhnH protein, phosphonate metabolism, function unknown.
 
     0.824
phnG
PhnG protein, phosphonate metabolism, function unknown.
 
     0.823
phnI
PhnI protein, phosphonate metabolism, function unknown.
 
     0.820
phnK
Phosphonate ABC transporter, ATP-binding component,PhnK protein.
 
     0.818
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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