Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA0730Conserved hypothetical protein. (229 aa)    
Predicted Functional Partners:
RPA0729
Conserved hypothetical protein.
 
     0.946
RPA3680
Possible pilus assembly protein cpaE.
 
  
 0.898
RPA3677
Conserved hypothetical protein.
 
  
 0.878
RPA3675
Flp/Fap pilin component.
 
  
 0.852
RPA3676
Putative type IV prepilin peptidase, cpaA.
 
  
 0.833
RPA0905
Flp/Fap pilin component.
 
  
 0.812
RPA4081
Possible pilus assembly protein cpaB.
 
  
 0.807
RPA3683
Conserved hypothetical protein; COGs COG2064.
 
    0.806
RPA3674
Conserved hypothetical protein.
 
     0.794
RPA3682
Conserved unknown protein; COGs COG2064.
 
  
 0.784
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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