STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurrence
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Experiments
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[Homology]
Score
RPA0737Putative oxalate/formate Major Facilitator Superfamily (MFS) antiporter. (567 aa)    
Predicted Functional Partners:
fdsA
NAD-dependent formate dehydrogenase alpha subunit.
   
 0.866
fdsD
Possible NAD-dependent formate dehydrogenase delta subunit.
 
     0.856
fdsC
Putative FdsC protein, formate dehydrogenase chain D; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
 
   
 0.836
fdsB
NAD-dependent formate dehydrogenase beta subunit.
 
     0.782
fdsG
Putative NAD-dependent formate dehydrogenase gamma subunit.
       0.766
RPA0731
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
  
 0.562
RPA0738
Possible L-sorbosone dehydrogenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
    0.543
hisA
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.465
RPA2459
Putative permease.
  
     0.465
RPA0380
Possible oxidoreductase similar to formate dehydrogenase and cbbBc of R. eutropha; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
    
 0.416
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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