STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA0757Hypothetical protein; COGs COG0056. (64 aa)    
Predicted Functional Partners:
RPA0755
Putative oligopeptide ABC transporter, ATP-binding component; Belongs to the ABC transporter superfamily.
       0.843
RPA0756
Putative amidase; Belongs to the amidase family.
       0.816
RPA0759
Putative oligopeptide ABC transporter, permease component.
       0.799
RPA0758
Putative oligopeptide ABC transporter, ATP-binding component; Belongs to the ABC transporter superfamily.
       0.764
RPA0760
Putative oligopeptide ABC transporter, permease component.
       0.752
RPA0754
Putative signal transduction histidine kinase with PAS/PAC domains.
       0.590
RPA0674
Possible alcohol dehydrogenase class III family.
   
    0.550
RPA0761
Possible oligopeptide ABC transporter, periplasmic binding protein component; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
       0.445
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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