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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA0761Possible oligopeptide ABC transporter, periplasmic binding protein component; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (553 aa)    
Predicted Functional Partners:
RPA0759
Putative oligopeptide ABC transporter, permease component.
 
 0.932
RPA0760
Putative oligopeptide ABC transporter, permease component.
 
 0.927
RPA0758
Putative oligopeptide ABC transporter, ATP-binding component; Belongs to the ABC transporter superfamily.
 
 
 0.886
RPA0755
Putative oligopeptide ABC transporter, ATP-binding component; Belongs to the ABC transporter superfamily.
 
  
 0.819
RPA4721
possible+E2677 pyruvate-flavodoxin oxidoreductase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
  
 0.771
RPA1471
Putative dipeptide ABC transporter (permease).
 
 0.722
RPA0762
Possible oligopeptide ABC transporter, periplasmic binding protein component.
 
 
 
0.705
RPA1472
Putative dipeptide transport permease protein.
 
 0.676
RPA1216
Putative ABC transporter, permease protein.
 
 0.643
RPA1215
Putative ABC transporter, permease protein.
 
 0.642
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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