Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA0766Transcriptional regulator, Crp/Fnr family. (235 aa)    
Predicted Functional Partners:
fixK2
Nitrogen fixation transcriptional regulator fixK2, Crp/Fnr family.
  
     0.760
hbaR
Hydroxybenzoate anaerobic degradation regulatory protein HbaR, Crp/Fnr family.
  
     0.725
RPA2866
Pyruvate dehydrogenase E1 beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
   
 
 0.720
RPA0767
Putative diguanylate cyclase (GGDEF) with PAS/PAC domain.
   
 
 0.576
nirK1
Nitrite reductase, major outer membrane copper-containing protein; Belongs to the multicopper oxidase family.
 
   
 0.534
nirK2
Dissimilatory nitrite reductase; Belongs to the multicopper oxidase family.
 
   
 0.534
RPA4144
Conserved hypothetical protein.
 
     0.523
RPA3318
Transcriptional regulator, Crp/Fnr family.
  
     0.518
aqpZ
Aquaporin Z (water channel); Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity; Belongs to the MIP/aquaporin (TC 1.A.8) family.
   
 0.489
RPA3018
Response regulator receiver:histidine kinase.
 
 
 
 0.408
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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