STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA0786Putative Adenylate/Guanylate cyclase. (464 aa)    
Predicted Functional Partners:
RPA4000
Adenylate/Guanylate cyclase.
 
   
 0.738
RPA1689
Conserved hypothetical protein.
  
     0.723
htpX-2
Putative heat shock protein (htpX); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the peptidase M48B family.
  
   0.599
RPA0282
Cyclic nucleotide binding protein.
 
 0.569
RPA2107
Sensor histidine kinase with a GAF, a Ser/Thr protein kinase, and an unknown domain.
 
 0.543
RPA2290
Conserved hypothetical protein.
 
    0.542
RPA4417
Sensor histidine kinase with PAS/PAC and response regulator receiver domains.
 
 
 0.530
RPA0785
Possible cytochrome P450 family proteins; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
  
 0.514
RPA3996
Probable transcriptional regulator, Crp/Fnr family.
 
 0.464
RPA4233
Cyclic nucleotide regulated K+ channel.
 
 0.464
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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