Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RPA0803Hypothetical protein; COGs COG1236. (348 aa)    
Predicted Functional Partners:
RPA0802
Possible DNA ligase.
 0.993
pgm1
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
  
 0.862
RPA0807
Possible ATP dependent DNA helicase.
 
    0.837
RPA0808
Hypothetical protein; COGs COG1407.
 
     0.829
RPA3650
ATP-dependent DNA ligase.
 
 0.732
RPA0801
Conserved hypothetical protein.
  
    0.724
RPA0804
Conserved hypothetical protein; InterPro IPR000051:IPR001440:IPR001601 COGs COG0500.
       0.695
matE1
Putative cation efflux pump, DNA-damage-inducible protein.
  
    0.646
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.646
RPA0862
G-protein beta WD-40 repeat; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
    
 0.626
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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