STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA0811Putative manganese transp. (448 aa)    
Predicted Functional Partners:
RPA1405
Putative urea amidolyase.
  
  
 0.689
RPA0859
ABC transporter, permease protein.
  
  
 0.619
RPA0810
Permeases of the drug/metabolite transporter (DMT) superfamily.
  
  
 0.548
RPA0858
ABC transporter, ATP-binding protein.
  
  
 0.463
pxpA
Possible lactam utilization protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
  
 0.444
RPA1747
Conserved hypothetical protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the D-glutamate cyclase family.
  
    0.428
RPA0809
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
     
 0.411
RPA3398
Possible arsenite permease.
  
    0.405
RPA0860
ABC transporter, periplasmic binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.403
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.