Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA0827Conserved hypothetical protein. (109 aa)    
Predicted Functional Partners:
RPA0826
DUF433.
 
   
 0.958
RPA2820
DUF433.
 
  
 0.801
RPA2819
Conserved hypothetical protein.
  
     0.689
RPA0828
Transcriptional regulator, MarR family.
  
    0.562
lepB1
Signal peptidase I; Belongs to the peptidase S26 family.
       0.536
RPA0825
TldD protein, suppresses inhibitory activity of CsrA; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
       0.536
RPA0276
PAP/25A core domain:DNA polymerase, beta-like region.
  
   
 0.413
RPA3608
PilT protein, N-terminal.
  
   
 0.405
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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