Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RPA0837Conserved hypothetical protein in cyt c oxidase gene clusters. (131 aa)    
Predicted Functional Partners:
RPA0838
Possible surfeit 1.
 
     0.906
coxG
Possible cytochrome-c oxidase assembly protein; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family.
 
     0.795
RPA0342
Conserved hypothetical protein.
  
     0.744
coxC
Cytochrome c oxidase subunit III.
 
     0.732
RPA2933
Conserved hypothetical protein.
  
     0.698
thrC
Threonine synthase.
       0.692
mpp
Putative protease; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the peptidase M16 family.
       0.654
RPA4530
Conserved hypothetical protein; Belongs to the UPF0262 family.
 
   
 0.608
RPA0841
Putative ribosomal-protein-alanine N-acetyltransferase.
       0.601
RPA0570
Conserved hypothetical protein.
  
   
 0.573
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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