STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA0880Hypothetical protein; InterPro IPR000694. (571 aa)    
Predicted Functional Partners:
RPA2752
Possible succinoglycan biosynthesis transport protein exoP.
 
   
 0.839
RPA2753
Conserved hypothetical protein.
 
     0.784
RPA4581
Conserved hypothetical protein.
 
     0.777
RPA3679
Possible pilus assembly protein cpaD; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.766
RPA4316
Conserved hypothetical protein; COGs COG3637.
  
     0.746
RPA0897
Conserved hypothetical protein; InterPro IPR000694 COGs COG2845.
 
     0.737
RPA3382
Conserved hypothetical protein.
  
     0.728
RPA3957
Hpt domain.
  
     0.725
RPA4205
Possible polysaccharide export protein, PST family.
 
    0.716
RPA3867
Conserved hypothetical protein.
 
     0.715
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.