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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA0884ABC transporter, substrate-binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (332 aa)    
Predicted Functional Partners:
RPA0883
ABC transporter, ATP-binding protein.
 
  
 0.897
RPA0882
ABC transporter, permease.
  
 0.891
RPA2042
Putative ABC transporter, permease protein.
  
 0.845
RPA2041
ABC-transport protein, ATP-binding protein.
 
  
 0.835
RPA2410
Putative urea/short-chain amide transport system substrate-binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
  
 0.580
RPA2498
Possible ABC transporter, permease protein.
 
  
 0.550
RPA4686
Possible ABC transporter, periplasmic amino acid-binding protein.
  
  
 0.530
RPA1385
Putative vanadium/vanadate transport system substrate-binding protein; Conserved in vnf operon of Azotobacter vinelandii.
   
  
 0.523
RPA2497
Putative anion ABC transporter, ATP-binding protein.
 
  
 0.518
RPA4088
Probable membrane fusion protein (HlyD family of secretion proteins) linked to ABC efflux pumps.
   
  
 0.515
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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