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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA0886Putative diguanylate cyclase (GGDEF). (502 aa)    
Predicted Functional Partners:
RPA3184
Putative cylclic diguanylate phosphodiesterase (EAL).
  
 0.881
RPA0145
Metal dependent phosphohydrolase with a response regulator receiver domain; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
 0.874
RPA1680
Putative response regulator and cylclic diguanylate phosphodiesterase (EAL).
 
 0.870
vieA
Putative cylclic diguanylate phosphodiesterase (EAL).
 
  
 0.824
RPA1248
Two-component transcriptional regulator, LuxR family.
 
  
 0.703
RPA4830
Metal dependent phosphohydrolase with a response regulator receiver domain.
 
 
 0.665
RPA2107
Sensor histidine kinase with a GAF, a Ser/Thr protein kinase, and an unknown domain.
 
 
 0.647
RPA4417
Sensor histidine kinase with PAS/PAC and response regulator receiver domains.
 
 
 0.609
RPA3170
Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS and GAF domains.
 
0.584
RPA0885
Conserved hypothetical protein.
  
    0.548
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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