STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA0901DUF81. (255 aa)    
Predicted Functional Partners:
sulP
Sulfate transporter family protein.
  
  
 0.759
RPA3633
Conserved hypothetical protein.
 
     0.701
RPA0902
Glyoxalase/Bleomycin resistance protein/dioxygenase domain.
       0.684
RPA1698
DUF81.
  
     0.609
cysW
Possible sulfate ABC transporter, permease component.
  
  
 0.582
RPA0903
Possible transcriptional regulator, TetR family.
       0.493
fixG,
4Fe-4S ferredoxin, iron-sulfur binding domain.
  
    0.459
fixG
Nitrogen fixation protein fixG, homologous to rdxB of R. sphaeroides; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
    0.459
modB
Molybdate transport system permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
     
 0.441
RPA2378
Putative tonB-dependent receptor protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.409
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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