STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA0902Glyoxalase/Bleomycin resistance protein/dioxygenase domain. (143 aa)    
Predicted Functional Partners:
RPA0903
Possible transcriptional regulator, TetR family.
 
    0.904
RPA0901
DUF81.
       0.690
RPA3869
Transcriptional regulator, XRE family.
  
    0.591
RPA1108
DGPF domain.
 
    0.481
cobB-2
Sir2 family, possible ADP ribosyltransferase; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily.
  
    0.461
RPA2265
Conserved hypothetical protein; InterPro IPR001034 COGs COG2378.
 
  
 0.459
RPA1109
RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family.
 
    0.451
RPA0878
Transcriptional regulator, AraC type; possible DNA gyrase inhibitor.
 
    0.448
RPA3905
Possible transcriptional regulator, TetR family; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
    0.443
RPA1031
Transcriptional regulator, MarR family; N-acetyltransferase.
 
  
 0.414
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.