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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA0905Flp/Fap pilin component. (57 aa)    
Predicted Functional Partners:
RPA3680
Possible pilus assembly protein cpaE.
 
  
 0.911
RPA3676
Putative type IV prepilin peptidase, cpaA.
 
  
 0.883
RPA3677
Conserved hypothetical protein.
 
  
 0.881
RPA4081
Possible pilus assembly protein cpaB.
 
  
 0.877
RPA3678
Putative exporter protein, cpaC; Belongs to the bacterial secretin family.
 
  
 0.811
RPA3683
Conserved hypothetical protein; COGs COG2064.
 
  
 0.806
RPA0730
Conserved hypothetical protein.
 
  
 0.804
RPA3682
Conserved unknown protein; COGs COG2064.
 
  
 0.788
RPA3149
Conserved hypothetical protein.
 
  
 0.778
RPA3674
Conserved hypothetical protein.
 
  
 0.731
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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