Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RPA0911Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (307 aa)    
Predicted Functional Partners:
RPA2222
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.721
RPA3796
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.715
RPA0130
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.691
oxyR
Hydrogen peroxide-inducible transcriptional regulator OxyR, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.670
RPA4283
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.642
RPA0910
DUF209:Cupin domain; Belongs to the pirin family.
   
 
 0.618
cbbR
Cbb operon transcriptional regulator CbbR, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.607
RPA3172
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.503
RPA2322
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.496
rnpO
RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
 
 
 0.438
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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