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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA0935Conserved hypothetical protein; InterPro IPR000379 COGs COG1073. (433 aa)    
Predicted Functional Partners:
RPA0936
Possible transcriptional regulator, TetR family.
 
    0.622
RPA1208
Putative dioxygenase.
 
    0.556
RPA1925
Putative transmembrane protein.
 
 
    0.551
RPA3338
Possible Condensation domain, peptide synthetase.
 
  
 0.495
RPA3442
Putative cyclase.
 
    0.481
RPA3643
Putative trehalose synthase.
  
    0.468
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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